QDNAseq - Quantitative DNA Sequencing for Chromosomal Aberrations
Quantitative DNA sequencing for chromosomal aberrations. The genome is divided into non-overlapping fixed-sized bins, number of sequence reads in each counted, adjusted with a simultaneous two-dimensional loess correction for sequence mappability and GC content, and filtered to remove spurious regions in the genome. Downstream steps of segmentation and calling are also implemented via packages DNAcopy and CGHcall, respectively.
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copynumbervariationdnaseqgeneticsgenomeannotationpreprocessingqualitycontrolsequencing
10.37 score 57 stars 6 dependents 287 scripts 925 downloadsQDNAseq.hg19 - QDNAseq bin annotation for hg19
This package provides QDNAseq bin annotations for the human genome build hg19.
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experimentdataorganismdatahomo_sapiens_datadatapkg
3.62 score 21 scriptsQDNAseq.mm10 - Bin annotation mm10
This package provides QDNAseq bin annotations for the mouse genome build mm10.
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experimentdataorganismdatamus_musculus_datadatapkg
3.30 score 6 scripts